MtGi9  targets of miRDeep-predicted candidate miRNAs identified by CleaveLand 2.0 (Addo-Quaye et al., 2009)
new final identifier cleavage site alignment score category nm category myc  target desription                                
new_miRc_234d 844 3,5 no tag 4 TC117299
new_miRc_234b 844 3,5 no tag 4 TC117299
new_miRc_234a 844 3,5 no tag 4 TC117299
new_miRc_162 447 7 2 2 TC121814 similar to UniRef100_A7QL85 Cluster: Chromosome chr3 scaffold_117; whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr3 scaffold_117; whole genome shotgun sequence - Vitis vinifera (Grape); partial (95%)
new_miRc_12 53 5 4 3 BQ165043 similar to UniRef100_A7R7S6 Cluster: Chromosome undetermined scaffold_1996; whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_1996; whole genome shotgun sequence - Vitis vinifera (Grape); partial (8%)
new_miRc_12 441 5 4 3 TC132325 weakly similar to UniRef100_Q9XED4 Cluster: Receptor-like protein kinase homolog RK20-1; n=1; Phaseolus vulgaris|Rep: Receptor-like protein kinase homolog RK20-1 - Phaseolus vulgaris (Kidney bean) (French bean); partial (19%)
new_miRc_12 892 5 4 3 TC137308 similar to UniRef100_Q70VA9 Cluster: Cp protein; n=1; Celosia cristata|Rep: Cp protein - Celosia cristata; partial (64%)
new_miRc_37 153 5,5 1 no tag TC115911 similar to UniRef100_A7QFR8 Cluster: Chromosome undetermined scaffold_89; whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_89; whole genome shotgun sequence - Vitis vinifera (Grape); partial (69%)
new_miRc_37 384 5 3 no tag AW257152 similar to UniRef100_Q76KV0 Cluster: DNA binding with one finger 4 protein; n=1; Pisum sativum|Rep: DNA binding with one finger 4 protein - Pisum sativum (Garden pea); partial (36%)
new_miRc_90 646 6 2 1 TC124215 similar to UniRef100_A7P4W8 Cluster: Chromosome chr4 scaffold_6; whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_6; whole genome shotgun sequence - Vitis vinifera (Grape); partial (43%)
new_miRc_90 672 6 0 0 TC129313 similar to UniRef100_A7P4W8 Cluster: Chromosome chr4 scaffold_6; whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_6; whole genome shotgun sequence - Vitis vinifera (Grape); partial (38%)
new_miRc_26e 481 0 no tag 2 TC114106 weakly similar to UniRef100_A2Q249 Cluster: Cyclin-like F-box; Calcium-binding EF-hand; n=1; Medicago truncatula|Rep: Cyclin-like F-box; Calcium-binding EF-hand - Medicago truncatula (Barrel medic); partial (15%)
new_miRc_26e 532 0 no tag 2 TC128012 UniRef100_Q0WLU6 Cluster: NADH dehydrogenase subunit 4; n=1; Arabidopsis thaliana|Rep: NADH dehydrogenase subunit 4 - Arabidopsis thaliana (Mouse-ear cress); partial (6%)
new_miRc_246f 179 6,5 no tag 0 AL384180
new_miRc_246b 179 6,5 no tag 0 AL384180
new_miRc_246c 179 6,5 no tag 0 AL384180
new_miRc_246a 179 6,5 no tag 0 AL384180
new_miRc_246e 179 6,5 no tag 0 AL384180
new_miRc_246d 179 6,5 no tag 0 AL384180
new_miRc_19b 1264 5 0 2 TC117244 homologue to UniRef100_O65735 Cluster: Fructose-bisphosphate aldolase; cytoplasmic isozyme; n=2; Cicer arietinum|Rep: Fructose-bisphosphate aldolase; cytoplasmic isozyme - Cicer arietinum (Chickpea) (Garbanzo); partial (98%)
new_miRc_19a 1264 5 0 2 TC117244 homologue to UniRef100_O65735 Cluster: Fructose-bisphosphate aldolase; cytoplasmic isozyme; n=2; Cicer arietinum|Rep: Fructose-bisphosphate aldolase; cytoplasmic isozyme - Cicer arietinum (Chickpea) (Garbanzo); partial (98%)
new_miRc_19b 1061 5 0 2 TC130419 homologue to UniRef100_P46257 Cluster: Fructose-bisphosphate aldolase; cytoplasmic isozyme 2; n=1; Pisum sativum|Rep: Fructose-bisphosphate aldolase; cytoplasmic isozyme 2 - Pisum sativum (Garden pea); partial (83%)
new_miRc_19a 1061 5 0 2 TC130419 homologue to UniRef100_P46257 Cluster: Fructose-bisphosphate aldolase; cytoplasmic isozyme 2; n=1; Pisum sativum|Rep: Fructose-bisphosphate aldolase; cytoplasmic isozyme 2 - Pisum sativum (Garden pea); partial (83%)
new_miRc_19b 37 5 2 0 TC139689 UniRef100_Q84KA1 Cluster: Alternative oxidase; n=1; Crocus sativus|Rep: Alternative oxidase - Crocus sativus (Saffron); partial (10%)
new_miRc_19a 37 5 2 0 TC139689 UniRef100_Q84KA1 Cluster: Alternative oxidase; n=1; Crocus sativus|Rep: Alternative oxidase - Crocus sativus (Saffron); partial (10%)
new_miRc_19b 953 5,5 4 0 TC130696 RanBP1
new_miRc_19a 953 5,5 4 0 TC130696 RanBP1
new_miRc_19b 314 5 0 2 DY615884 homologue to UniRef100_O65735 Cluster: Fructose-bisphosphate aldolase; cytoplasmic isozyme; n=2; Cicer arietinum|Rep: Fructose-bisphosphate aldolase; cytoplasmic isozyme - Cicer arietinum (Chickpea) (Garbanzo); partial (24%)
new_miRc_19a 314 5 0 2 DY615884 homologue to UniRef100_O65735 Cluster: Fructose-bisphosphate aldolase; cytoplasmic isozyme; n=2; Cicer arietinum|Rep: Fructose-bisphosphate aldolase; cytoplasmic isozyme - Cicer arietinum (Chickpea) (Garbanzo); partial (24%)
new_miRc_19b 328 5 0 2 BQ146244 homologue to UniRef100_O65735 Cluster: Fructose-bisphosphate aldolase; cytoplasmic isozyme; n=2; Cicer arietinum|Rep: Fructose-bisphosphate aldolase; cytoplasmic isozyme - Cicer arietinum (Chickpea) (Garbanzo); partial (23%)
new_miRc_19a 328 5 0 2 BQ146244 homologue to UniRef100_O65735 Cluster: Fructose-bisphosphate aldolase; cytoplasmic isozyme; n=2; Cicer arietinum|Rep: Fructose-bisphosphate aldolase; cytoplasmic isozyme - Cicer arietinum (Chickpea) (Garbanzo); partial (23%)
new_miRc_278 1543 7 2 2 TC123631 homologue to UniRef100_Q7X9K1 Cluster: Ribosomal Pr 117; n=4; Magnoliophyta|Rep: Ribosomal Pr 117 - Triticum aestivum (Wheat); partial (95%)
new_miRc_278 600 7 2 2 TC126471 homologue to UniRef100_Q7X9K1 Cluster: Ribosomal Pr 117; n=4; Magnoliophyta|Rep: Ribosomal Pr 117 - Triticum aestivum (Wheat); partial (95%)
new_miRc_32 608 5,5 0 no tag BG645949 similar to UniRef100_Q9SW88 Cluster: Amine oxidase; n=1; Canavalia lineata|Rep: Amine oxidase - Canavalia lineata; partial (13%)
new_miRc_225a 197 5,5 3 2 EV258960
new_miRc_225a 217 5,5 3 2 TC130723
new_miRc_225a 182 5,5 3 2 TC134693
new_miRc_11 1673 6,5 2 0 TC118040 UniRef100_Q2MJ22 Cluster: Cytochrome P450 monooxygenase CYP51G1; n=1; Medicago truncatula|Rep: Cytochrome P450 monooxygenase CYP51G1 - Medicago truncatula (Barrel medic); complete
new_miRc_206 45 6,5 1 no tag BE315951
new_miRc_222 180 1 no tag 4 BG448399 similar to UniRef100_Q282V2 Cluster: Cytochrome b; n=1; Mabuya macularia|Rep: Cytochrome b - Mabuya macularia; partial (5%)
new_miRc_275 915 5 no tag 3 TC135802 UniRef100_Q8H1Y6 Cluster: Glutathione-S-transferse-like protein; n=1; Medicago truncatula|Rep: Glutathione-S-transferse-like protein - Medicago truncatula (Barrel medic); complete
new_miRc_275 330 5 no tag 3 AL387620 UniRef100_Q8H1Y6 Cluster: Glutathione-S-transferse-like protein; n=1; Medicago truncatula|Rep: Glutathione-S-transferse-like protein - Medicago truncatula (Barrel medic); partial (20%)
new_miRc_150 96 7 no tag 2 AJ499301 similar to UniRef100_Q2J870 Cluster: Uncharacterised conserved protein UCP033563; n=1; Frankia sp. CcI3|Rep: Uncharacterised conserved protein UCP033563 - Frankia sp. (strain CcI3); partial (5%)
new_miRc_16 244 4,5 no tag 4 BE240513 weakly similar to UniRef100_Q9STC3 Cluster: Metallothionein-like protein; n=1; Elaeis guineensis|Rep: Metallothionein-like protein - Elaeis guineensis var. tenera (Oil palm); partial (71%)
new_miRc_39a 674 6,5 2 2 TC131880 UniRef100_P93333 Cluster: PR10-1 protein; n=3; Medicago|Rep: PR10-1 protein - Medicago truncatula (Barrel medic); complete
new_miRc_39b 674 6,5 2 2 TC131880 UniRef100_P93333 Cluster: PR10-1 protein; n=3; Medicago|Rep: PR10-1 protein - Medicago truncatula (Barrel medic); complete
new_miRc_39a 775 6,5 2 2 TC118796 UniRef100_P93333 Cluster: PR10-1 protein; n=3; Medicago|Rep: PR10-1 protein - Medicago truncatula (Barrel medic); complete
new_miRc_39b 775 6,5 2 2 TC118796 UniRef100_P93333 Cluster: PR10-1 protein; n=3; Medicago|Rep: PR10-1 protein - Medicago truncatula (Barrel medic); complete
new_miRc_39a 889 6,5 2 2 TC141258 similar to UniRef100_Q40336 Cluster: Proline-rich cell wall protein; n=1; Medicago sativa|Rep: Proline-rich cell wall protein - Medicago sativa (Alfalfa); partial (40%)
new_miRc_39b 889 6,5 2 2 TC141258 similar to UniRef100_Q40336 Cluster: Proline-rich cell wall protein; n=1; Medicago sativa|Rep: Proline-rich cell wall protein - Medicago sativa (Alfalfa); partial (40%)
new_miRc_39a 810 5,5 no tag 0 TC125103 similar to UniRef100_A7PZR3 Cluster: Chromosome chr15 scaffold_40; whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr15 scaffold_40; whole genome shotgun sequence - Vitis vinifera (Grape); partial (54%)
new_miRc_39b 810 5,5 no tag 0 TC125103 similar to UniRef100_A7PZR3 Cluster: Chromosome chr15 scaffold_40; whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr15 scaffold_40; whole genome shotgun sequence - Vitis vinifera (Grape); partial (54%)
new_miRc_39a 708 6,5 2 2 TC118500 UniRef100_P93333 Cluster: PR10-1 protein; n=3; Medicago|Rep: PR10-1 protein - Medicago truncatula (Barrel medic); complete
new_miRc_39b 708 6,5 2 2 TC118500 UniRef100_P93333 Cluster: PR10-1 protein; n=3; Medicago|Rep: PR10-1 protein - Medicago truncatula (Barrel medic); complete