Mt3 targets of miRDee- predicted novel M. truncatula candidate microRNAs identified by CleaveLand 2.0 (Addo-Quaye et al., 2009)
new final identifier (miRNA) cleavage site alignment score category nm category myc target desription
new_miRc_162 1516 6 4 1 IMGA|Medtr3g077040.2 DNA-binding WRKY chr03_pseudomolecule_IMGAG_V3 18052472-18056742 E EGN_Mt090430 20090702
new_miRc_162 1935 6 4 1 IMGA|Medtr3g077040.1 DNA-binding WRKY chr03_pseudomolecule_IMGAG_V3 18050053-18056742 E EGN_Mt090430 20090702
new_miRc_37 203 5,5 1 no tag IMGA|Medtr2g080590.2 hypothetical protein chr02_pseudomolecule_IMGAG_V3 18594292-18598339 E EGN_Mt090430 20090702
new_miRc_37 2012 4 no tag 2 IMGA|Medtr5g094880.1 Ethylene insensitive 3 chr05_pseudomolecule_IMGAG_V3 37605130-37601838 E EGN_Mt090430 20090702
new_miRc_41 882 7 2 0 IMGA|Medtr7g111980.1 NUDIX hydrolase chr07_pseudomolecule_IMGAG_V3 26429999-26433913 E EGN_Mt090430 20090702
new_miRc_280 4423 2,5 no tag 4 IMGA|Medtr5g093390.1 Protein kinase chr05_pseudomolecule_IMGAG_V3 36734918-36742442 E EGN_Mt090430 20090702
new_miRc_26e 1456 0 no tag 2 IMGA|Medtr8g086510.1 hypothetical protein chr08_pseudomolecule_IMGAG_V3 17748331-17750894 E EGN_Mt090430 20090702
new_miRc_252 4136 5 2 no tag IMGA|Medtr8g029450.1 U box; Armadillo-like helical chr08_pseudomolecule_IMGAG_V3 6505182-6510771 E EGN_Mt090430 20090702
new_miRc_40a 819 5 2 3 IMGA|Medtr7g103050.4 Methionine synthase, vitamin-B12 independent chr07_pseudomolecule_IMGAG_V3 23004854-22999451 E EGN_Mt090430 20090702
new_miRc_40b 819 5 2 3 IMGA|Medtr7g103050.4 Methionine synthase, vitamin-B12 independent chr07_pseudomolecule_IMGAG_V3 23004854-22999451 E EGN_Mt090430 20090702
new_miRc_40a 877 5 2 3 IMGA|Medtr7g103050.1 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase chr07_pseudomolecule_IMGAG_V3 23004854-22999451 E EGN_Mt090430 20090702
new_miRc_40b 877 5 2 3 IMGA|Medtr7g103050.1 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase chr07_pseudomolecule_IMGAG_V3 23004854-22999451 E EGN_Mt090430 20090702
new_miRc_246f 628 6,5 no tag 0 IMGA|Medtr2g056300.1 AWPM-19-like chr02_pseudomolecule_IMGAG_V3 15374884-15373423 F EGN_Mt090430 20090702
new_miRc_246b 628 6,5 no tag 0 IMGA|Medtr2g056300.1 AWPM-19-like chr02_pseudomolecule_IMGAG_V3 15374884-15373423 F EGN_Mt090430 20090702
new_miRc_246c 628 6,5 no tag 0 IMGA|Medtr2g056300.1 AWPM-19-like chr02_pseudomolecule_IMGAG_V3 15374884-15373423 F EGN_Mt090430 20090702
new_miRc_246a 628 6,5 no tag 0 IMGA|Medtr2g056300.1 AWPM-19-like chr02_pseudomolecule_IMGAG_V3 15374884-15373423 F EGN_Mt090430 20090702
new_miRc_246e 628 6,5 no tag 0 IMGA|Medtr2g056300.1 AWPM-19-like chr02_pseudomolecule_IMGAG_V3 15374884-15373423 F EGN_Mt090430 20090702
new_miRc_246d 628 6,5 no tag 0 IMGA|Medtr2g056300.1 AWPM-19-like chr02_pseudomolecule_IMGAG_V3 15374884-15373423 F EGN_Mt090430 20090702
new_miRc_2d 27 6 0 2 IMGA|Medtr4g163270.1 Major facilitator superfamily MFS_1 chr04_pseudomolecule_IMGAG_V3 41354679-41359004 E EGN_Mt090430 20090702
new_miRc_2a 27 6 0 2 IMGA|Medtr4g163270.1 Major facilitator superfamily MFS_1 chr04_pseudomolecule_IMGAG_V3 41354679-41359004 E EGN_Mt090430 20090702
new_miRc_2b 27 6 0 2 IMGA|Medtr4g163270.1 Major facilitator superfamily MFS_1 chr04_pseudomolecule_IMGAG_V3 41354679-41359004 E EGN_Mt090430 20090702
new_miRc_2c 27 6 0 2 IMGA|Medtr4g163270.1 Major facilitator superfamily MFS_1 chr04_pseudomolecule_IMGAG_V3 41354679-41359004 E EGN_Mt090430 20090702
new_miRc_19b 1266 5 0 2 IMGA|Medtr5g077730.1 Fructose-bisphosphate aldolase, class-I chr05_pseudomolecule_IMGAG_V3 28660573-28657891 F EGN_Mt090430 20090702
new_miRc_19a 1266 5 0 2 IMGA|Medtr5g077730.1 Fructose-bisphosphate aldolase, class-I chr05_pseudomolecule_IMGAG_V3 28660573-28657891 F EGN_Mt090430 20090702
new_miRc_88b 463 6,5 no tag 1 IMGA|Medtr5g092020.1 Nuclear ribonuclease Z, putative chr05_pseudomolecule_IMGAG_V3 36067275-36071335 E EGN_Mt090430 20090702
new_miRc_88a 463 6,5 no tag 1 IMGA|Medtr5g092020.1 Nuclear ribonuclease Z, putative chr05_pseudomolecule_IMGAG_V3 36067275-36071335 E EGN_Mt090430 20090702
new_miRc_88c 463 6,5 no tag 1 IMGA|Medtr5g092020.1 Nuclear ribonuclease Z, putative chr05_pseudomolecule_IMGAG_V3 36067275-36071335 E EGN_Mt090430 20090702
new_miRc_32 1378 6 3 3 IMGA|Medtr7g006100.1 Transaldolase subfamily; chr07_pseudomolecule_IMGAG_V3 850479-845072 F EGN_Mt090430 20090702
new_miRc_236h 46 4 no tag 4 IMGA|Medtr3g025840.1 hypothetical protein chr03_pseudomolecule_IMGAG_V3 6843240-6844564 F EGN_Mt090430 20090702
new_miRc_236d 46 4 no tag 4 IMGA|Medtr3g025840.1 hypothetical protein chr03_pseudomolecule_IMGAG_V3 6843240-6844564 F EGN_Mt090430 20090702
new_miRc_4 896 6,5 3 4 IMGA|Medtr5g007800.1 Chalcone and stilbene synthases, C-terminal chr05_pseudomolecule_IMGAG_V3 1303649-1305141 E EGN_Mt090430 20090702
new_miRc_4 944 6,5 3 4 IMGA|Medtr5g007810.1 Chalcone and stilbene synthases, C-terminal chr05_pseudomolecule_IMGAG_V3 1307712-1309413 F EGN_Mt090430 20090702
new_miRc_225a 602 7 no tag 0 IMGA|Medtr5g010840.1 F-box protein interaction domain chr05_pseudomolecule_IMGAG_V3 2775492-2777895 E EGN_Mt090430 20090702
new_miRc_225a 3874 7 1 1 IMGA|Medtr7g127600.1 A49-like RNA polymerase I associated factor chr07_pseudomolecule_IMGAG_V3 29962438-29951142 E EGN_Mt090430 20090702
new_miRc_225a 206 5,5 3 2 IMGA|Medtr5g019980.1 hypothetical protein chr05_pseudomolecule_IMGAG_V3 7516978-7519545 E EGN_Mt090430 20090702
new_miRc_104 120 0 no tag 2 IMGA|Medtr4g012010.1 NB-ARC chr04_pseudomolecule_IMGAG_V3 1888201-1887024 E EGN_Mt090430 20090702
new_miRc_145a 892 6,5 no tag 1 IMGA|Medtr3g010170.1 Pectinesterase inhibitor chr03_pseudomolecule_IMGAG_V3 1683078-1684003 F EGN_Mt090430 20090702
new_miRc_47 785 5,5 no tag 1 IMGA|Medtr6g090080.1 Arf GTPase activating protein chr06_pseudomolecule_IMGAG_V3 18973505-18976609 E EGN_Mt090430 20090702
new_miRc_15 131 6 1 no tag IMGA|Medtr3g102980.1 hypothetical protein chr03_pseudomolecule_IMGAG_V3 25252245-25254712 E EGN_Mt090430 20090702
new_miRc_248 167 6 no tag 3 IMGA|Medtr4g137490.1 Cupin chr04_pseudomolecule_IMGAG_V3 33872636-33874753 E EGN_Mt090430 20090702
new_miRc_248 234 6,5 no tag 3 IMGA|Medtr4g137470.1 Cupin chr04_pseudomolecule_IMGAG_V3 33864294-33867245 E EGN_Mt090430 20090702
new_miRc_223b 681 6,5 3 3 IMGA|Medtr3g143560.1 O-methyltransferase, family 2; Winged helix repressor DNA-binding chr03_pseudomolecule_IMGAG_V3 37062625-37066690 F EGN_Mt090430 20090702
new_miRc_223a 681 6,5 3 3 IMGA|Medtr3g143560.1 O-methyltransferase, family 2; Winged helix repressor DNA-binding chr03_pseudomolecule_IMGAG_V3 37062625-37066690 F EGN_Mt090430 20090702
new_miRc_199 171 7 3 no tag IMGA|Medtr6g101840.1 Protein of unknown function DUF1070 chr06_pseudomolecule_IMGAG_V3 22445064-22445484 E EGN_Mt090430 20090702
new_miRc_222 179 1 no tag 4 IMGA|Medtr4g140370.3 Phosphoglycerate mutase 1 chr04_pseudomolecule_IMGAG_V3 34402951-34403686 E EGN_Mt090430 20090702
new_miRc_201b 424 6 no tag 3 IMGA|Medtr3g012940.1 Ribosomal protein S4 chr03_pseudomolecule_IMGAG_V3 2297351-2295367 E EGN_Mt090430 20090702
new_miRc_201b 433 6 no tag 3 IMGA|Medtr3g012920.1 Ribosomal protein S4 chr03_pseudomolecule_IMGAG_V3 2289880-2291742 E EGN_Mt090430 20090702
new_miRc_201b 407 6 no tag 3 IMGA|Medtr3g024710.1 Ribosomal protein S4, bacterial and organelle form chr03_pseudomolecule_IMGAG_V3 6292777-6293640 E EGN_Mt090430 20090702
new_miRc_275 902 5 no tag 3 IMGA|Medtr5g084780.1 Glutathione S-transferase, C-terminal; Thioredoxin fold chr05_pseudomolecule_IMGAG_V3 32299995-32298187 F EGN_Mt090430 20090702
new_miRc_236a 1091 4,5 4 no tag IMGA|Medtr5g101430.1 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase chr05_pseudomolecule_IMGAG_V3 40601425-40595603 F EGN_Mt090430 20090702
new_miRc_236e 1091 4,5 4 no tag IMGA|Medtr5g101430.1 Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase chr05_pseudomolecule_IMGAG_V3 40601425-40595603 F EGN_Mt090430 20090702
new_miRc_80d 128 6 1 no tag IMGA|Medtr1g129500.1 Pathogenesis-related transcriptional factor and ERF chr01_pseudomolecule_IMGAG_V3 28943207-28944231 E EGN_Mt090430 20090702
new_miRc_80a 128 6 1 no tag IMGA|Medtr1g129500.1 Pathogenesis-related transcriptional factor and ERF chr01_pseudomolecule_IMGAG_V3 28943207-28944231 E EGN_Mt090430 20090702
new_miRc_80c 128 6 1 no tag IMGA|Medtr1g129500.1 Pathogenesis-related transcriptional factor and ERF chr01_pseudomolecule_IMGAG_V3 28943207-28944231 E EGN_Mt090430 20090702